Preheat your oven to 350°F and grease a 9x13 inch baking dish (or similar size) with butter or non-stick spray. I like to use parchment paper in addition to greasing—it makes removing the brownies so much easier and ensures clean edges.
Combine the butter, chopped chocolate, and sifted cocoa powder in a heat-safe bowl and melt together gently. You can do this in the microwave in 30-second intervals, stirring between each one, or over a double boiler for more control. Stir until completely smooth—this creates the rich chocolate foundation for your brownies. I find that having the chocolate pieces small and uniform helps them melt evenly without any lumps.
Stir the brown sugar, white sugar, vanilla, and room-temperature egg yolk into the melted chocolate mixture from Step 2. Mix thoroughly until the sugars are fully incorporated and the mixture is smooth. The room-temperature egg yolk integrates better than a cold one, creating a more cohesive batter.
In a separate small bowl, whisk together the baking soda and salt. Add this to the wet mixture from Step 3 and stir well. Now fold in the shredded and squeezed-dry zucchini until evenly distributed throughout the batter. The zucchini adds moisture and texture while keeping these brownies tender—squeezing out the excess water is crucial so your brownies don't become soggy.
Gently fold the flour into the batter from Step 4 until just combined—don't overmix, as this can lead to dense brownies. Fold in 1 cup of chocolate chips. Pour the batter into your prepared pan from Step 1 and smooth the top with a spatula. Scatter the remaining 1 cup of chocolate chips evenly over the top, then sprinkle with the flaky sea salt for a subtle contrast that enhances the chocolate flavor.
Bake for 25-30 minutes, until a toothpick inserted into the center comes out with just a few moist crumbs—don't overbake or you'll lose the fudgy texture. Remove from the oven and let the brownies cool completely in the pan before cutting. This resting time allows the crumb structure to set properly, giving you clean, beautiful slices.